All functions

Detect_single_marker()

Detect single markers of specific cell groups

Detect_single_marker_all()

Detect single markers of all cell groups

firstup()

Firstup character

generate_report()

generate html report for single markers of all cell groups

generate_report_rmd()

generate html report for single markers of all cell groups

get_antibody()

Get Antibody information table

get_gene_score()

Calculate gene specific score in both direction

get_gene_score_neg()

Calculate gene negative specific score

get_gene_score_neg.fbeta()

Calculate gene positive specific score with FBeta (Hypergate like approach)

get_gene_score_pos()

Calculate gene positive specific score

get_gene_score_pos.fbeta()

Calculate gene positive specific score with FBeta (Hypergate like approach)

get_original_alpha()

Calculate gene negative specific score

get_split_pos_pos()

UmapPlot based on results from Markers Greedy Search

intersect.ignorecase()

Intersect 2 list ignoring the cases and return the elements in list1

makeid()

make id for plotting

normalize()

Min-Max Normalization

plot_filter_stepbystep_first2()

Detect greedy step by step filters for cell group identification

plot_ridge()

RidgePlot of selected genes, with split value