generate html report for single markers of all cell groups

Source: R/Cell_markers.ident.R

generate html report for single markers of all cell groups

generate_report_rmd(
  scrna,
  markers.list,
  aggr.other = F,
  top_n_genes = 6,
  ridge_ncol = 3,
  fname = NULL,
  fpath = ".",
  assay = "RNA",
  slot = "data",
  org = "human"
)

Arguments

scrna

seurat obj to be used

markers.list

results from Detect_single_marker_all()

top_n_genes

top number of genes for RidgePlot

fname

file name. Default NULL

fpath

Path to generate report

sc2marker_ncol

number of col of Ridgeplot

Value

list of markers performance