Calculate gene positive specific score with FBeta (Hypergate like approach) — get_gene_score_neg.fbeta • sc2marker

Calculate gene FBeta score with negative direction

get_gene_score_neg.fbeta(
  scrna,
  gene,
  id,
  step = 0.01,
  assay = "RNA",
  slot = "data"
)

Arguments

scrna: obj to use
gene: gene to use
id: interested cell id
step: quantile step
assay: which assay to use in obj, default RNA
slot: which slot to use, default data
panel: ID panel in metadata of obj

Value

seurat obj with re-set Idents