Calculate gene positive specific score

Source: R/Cell_markers.ident.R

Calculate gene specific score in positive direction

get_gene_score_pos(
  scrna,
  gene,
  id,
  step = 0.01,
  assay = "RNA",
  slot = "data",
  pseudo.count = 0.01
)

Arguments

scrna

obj to use

gene

gene to use

id

interested cell id

step

quantile step

assay

which assay to use in obj, default RNA

slot

which slot to use, default data

Value

seurat obj with re-set Idents