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IntraTalkerPy 0.3.0 documentation
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IntraTalkerPy 0.3.0 documentation

Contents:

  • Installation
  • Support
  • Tutorials
    • Case study: Il1rn knockout bone marrow
      • 1. Introduction and Setup
      • 2. Ligand–receptor inference
      • 3. Regulon and TF activity
      • 4. IntraTalker + CrossTalkeR2
      • 5. Sankey plotting of inter- and intracellular communication
      • 6. Communication communities
      • 7. Receptome construction
      • 8. The MSC trajectory object
      • 9. Ridge models and KO simulations
      • 10. Differential pseudotime and receptor ranking
      • 11. Session info
  • API
    • Transcription Factor API
    • Perturbation API
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API¶

The package has two separate modules:

  • Transcription Factor API
    • Analysis
    • Significant TFs
    • Utilities
    • TF Object
    • Condition Significance
    • Network Generation
    • Plotting
  • Perturbation API
    • Methods
    • Utilities
    • Plotting
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Transcription Factor API
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11. Session info
Copyright © 2025, Vanessa Kloeker and Larissa Hermanns
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