Package index

All functions

LRObj-class lrbject

Run and Generate all LR Downstream analysis

analise_LR()

Run all LR Downstream analysis

create_diff_table()

Read the lrobject and generate the comparative tables

generate_report()

Run all LR Downstream analysis

make_report()

Generate a report for given LRObj

plot_Heatmap()

This function generates the graph adjacency matrix Heatmap

plot_Volcano()

This function generates the enhancedVolcanoplot

plot_bar_rankings()

This function generates the barplot for a given network ranking on the CGI level. Further, the genes can be filtered by selected gene types to filter the plot.

plot_cci()

Plot Cell Cell Interaction

plot_deregulated_pathways()

This function is a proxy to the PCA plot in comparative conditions

plot_graph_sankey_tf()

This function creates a sankey plot for a selected gene including transcription factor interactions.

plot_pca()

This function is a proxy to the PCA plot

plot_pca_LR_comparative()

This function is a proxy to the PCA plot in comparative conditions

plot_sankey()

This function plots a sankey plot for selected genes or cell types

read_lr_single_condition()

Read single condition tables

set_coords()

This function assigns coordinates in the sankey plots for the genes on the dataframe