This function generates the barplot for a given network ranking on the CGI level. Further, the genes can be filtered by selected gene types to filter the plot. — plot_bar_rankings • CrossTalkeR

This function generates the barplot for a given network ranking on the CGI level. Further, the genes can be filtered by selected gene types to filter the plot.

Usage

plot_bar_rankings(
  data_object,
  table_name,
  ranking,
  type = NULL,
  filter_sign = NULL,
  mode = "cci",
  top_num = 10
)

Arguments

data_object: LRobject with all data
table_name: name of the ranking table
ranking: name of the network ranking to use
type: gene type (L,R,TF, LR/RL, RTF/TFR, LTF/TFL)
filter_sign: show all (NULL), only positive (pos), or only negativ (neg) results
top_num: number of top genes to show in positive or negative direction

Value

R default plot