Get correlation

This function will compute the correlation between TF expression as measured by RNA-seq and binding activity estimated from ATAC-seq along the trajectory.

GetCorrelation(trajectory1, trajectory2)

Arguments

trajectory1

A SummarizedExperiment object for TF activity generated by the function GetTrajectory

trajectory2

A SummarizedExperiment object for TF expression generated by the function GetTrajectory

Value

A data frame cantaining the correlation

Examples

if (FALSE) {
df.cor <- GetCorrelation(
   trajectory1 = trajMM,
   trajectory2 = trajRNA
)
}