Plot the target gene in spatial space

This function plots the overall expression of all target genes for a particular TF using spatial transcriptome data. It is based on

GRNSpatialPlot(
  object,
  assay,
  df.grn,
  tf.use,
  min.cutoff = "q5",
  max.cutoff = "q95",
  vis.option = "B",
  crop = TRUE
)

Arguments

object

A Seurat object of spatial transcriptome data

assay

Which assay to plot

df.grn

A data frame including the inferred gene regulatory network

tf.use

Which TF to use

min.cutoff

Minimum cutoff values for each feature

max.cutoff

Maximum cutoff values for each feature

vis.option

Options for visualization. Default: "B"

Value

A ggplot object