Plot cell proportion — CellPropPlot • scMEGA

This function will generate a bar plot to visualize the cell proportion across different samples

CellPropPlot(object, group.by = NULL, prop.in = NULL, cols = NULL)

Arguments

object: Seurat object
group.by: Name of one metadata column to group the cells
prop.in: Name of one metadata column to compute the cell proportion
cols: Specific colors for plotting

Value

A ggplot object

Examples

library(Seurat)
#> Loading required package: SeuratObject
#> Loading required package: sp
#> 
#> Attaching package: ‘SeuratObject’
#> The following objects are masked from ‘package:base’:
#> 
#>     intersect, t
data(pbmc_small)
CellPropPlot(
pbmc_small,
group.by = "RNA_snn_res.1",
prop.in = "groups"
)