getRefMatrix

We get the reference values from the MAEGATK result. Source: https://github.com/petervangalen/MAESTER-2021

Usage

getRefMatrix(SE_object, letter, chromosome_prefix = "chrM")

Arguments

SE_object

SummarizedExperiment object.

letter

The base you are analysing. You get a matrix that shows which cells have how many reference reads for this letter.

chromosome_prefix

The chromosome prefix used.