We plot a heatmap of a set of Variants Of Interest using the Variant Allele Frequency values of a SummarizedExperiment object.
Usage
HeatmapVoi(
SE,
voi,
annotation_trait = NULL,
column_title = NULL,
remove_empty_cells = FALSE
)
Arguments
- SE
SummarizedExperiment object.
- voi
Variants Of Interest.
- annotation_trait
Cell Annotation at the bottom of the heat map.
- column_title
The title of the heat map. Default = NULL
- remove_empty_cells
Should cells that have a fraction of 0 for all variants be removed? Default = FALSE