Filtering_VAF_Threshold

We determine the number of mutated cells for a given variant using a vector of VAF thresholds.

Usage

Filtering_VAF_Threshold(SE, variant = NULL, thresholds = NULL, verbose = TRUE)

Arguments

SE

SummarizedExperiment object.

variant

Which variant should be evaluated? Cannot be more than 1 variant at a time.

thresholds

The thresholds to be evaluated. Default between 0.01 and 0.99 in steps of 0.01.

verbose

Should the function be verbose?