AllelFrequencyFoldChange

Check if a cell is supported by a set of variants.

Usage

AllelFrequencyFoldChange(
  SE,
  VOI = NULL,
  group_of_interest,
  group1 = "group1",
  group2 = "group2",
  maximum_foldchange = NULL,
  minimum_foldchange = NULL,
  minimum_coverage = NULL,
  minimum_allele_freq = NULL,
  maximum_allele_freq = NULL,
  verbose = FALSE
)

Arguments

SE

SummarizedExperiment object.

VOI

The variants variants to be analyzed. If NULL all are used.

group_of_interest

The column data that divides the cells.

group1

The first group.

group2

The second group.

maximum_foldchange

Maximum fold change.

minimum_foldchange

Minimum fold change.

minimum_coverage

Minimum coverage for a variant.

minimum_allele_freq

Minimum allele frequency in both groups.

maximum_allele_freq

Maximum allele frequency in both groups.

verbose

Should the function be verbose? Default = TRUE