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.CCbyGenes function

dot-CCbyGenes.Rd

Top positive&negative peaks of CCs

Usage

.CCbyGenes(
  object,
  CCs = 1:3,
  topN = 10,
  RNA.assay = "RNA",
  MOJITOO.reduction = "MOJITOO",
  filter.mito = T,
  filter.ribo = T
)

Arguments

object

ArchRProject object

CCs

CC vector which CCs

topN

topn genes to plot

RNA.assay

RNA assay name

MOJITOO.reduction

mojitoo reduction name

filter.mito

bool if filter mitochondria of genes

filter.ribo

bool if filter ribosome of genes

Examples

.CCbyGenes()
#> Error in .CCbyGenes(): could not find function ".CCbyGenes"