EpiDISH deconvolution
Usage
deconvolution_epidish(
ref_mat,
new_data,
epidish_method = "CBS",
epidish_nuv = seq(0.1, 1, 0.1),
epidish_maxit = 10000
)
Arguments
- ref_mat
Reference matrix.
- new_data
New data matrix.
- epidish_method
One of `CBS` (Cibersort), `RPC` (Robust Partial Correlations), `CP` (Constrained Projection). Default is `CBS`. See `EpiDISH` documentation for more information.
- epidish_nuv
A vector of candidate values used for svm. Only used when epidish_method is set to `CBS`. See `EpiDISH` documentation for more information.
- epidish_maxit
Integer with the number of max iterations for IWLS (Iterative Weighted Least Squares). Only used when epidish_method is set to `RPC`.