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EpiDISH deconvolution

Usage

deconvolution_epidish(
  ref_mat,
  new_data,
  epidish_method = "CBS",
  epidish_nuv = seq(0.1, 1, 0.1),
  epidish_maxit = 10000
)

Arguments

ref_mat

Reference matrix.

new_data

New data matrix.

epidish_method

One of `CBS` (Cibersort), `RPC` (Robust Partial Correlations), `CP` (Constrained Projection). Default is `CBS`. See `EpiDISH` documentation for more information.

epidish_nuv

A vector of candidate values used for svm. Only used when epidish_method is set to `CBS`. See `EpiDISH` documentation for more information.

epidish_maxit

Integer with the number of max iterations for IWLS (Iterative Weighted Least Squares). Only used when epidish_method is set to `RPC`.